AMBER Tutorials

From a seminar presented at Pittsburgh Supercomputer Center in August, 1996.

Crown ether in vacuum: build crown and perturb complexed ion.

Methane in water box: build methane, solvate, equilibrate and perturb.

Streptavidin/biotin complex, partially solvated: build biotin, load complex, partially solvate, equilibrate dynamics

DNA: building a 10-mer poly(A)-poly(T) molecule using the tools of AMBER 4.1, equilibrating it and a little bit about analyzing the data...

Convenient links to other AMBER pages.

Last modified: Thu Aug 29 12:25:03 1996